Breast Cancer is not a Pink Ribbon.

20 10 2010

I have always had mixed feelings in case of large happenings like marches and ribbon activities and cancer months. September is the ovarian cancer month (and also a US Prostate Cancer Month and a childhood cancer month) and  October the breast cancer month…. We have only 12 months in a year!

Please, don’t misunderstand me! Awareness is very important, also in the case of breast cancer: Awareness so to recognize breast cancer in an early stage, awareness of preventive measures of cancer,  awareness what women with breast cancer go through, awareness that breast cancer often can be cured, awareness that research is needed, and thus money.

But I also feel that the attention is overdone and often hypocritical, with fancy pink ribbons and “pink”: everywhere. This feeling is strengthened by some recent articles. For instance this article in Health.Chance.org, called Pink Ribbon Hypocrisy: Boozing It Up for Breast Cancer discussing that fast food and alcohol companies Use Breast Cancer as a Marketing Ploy (whereas these items some reputation if it comes to -certain types of- cancer). You can sign a petition here against it.

There is even a book Pink Ribbon Blues – How Breast Cancer Culture Undermines Women’s Health, written by Gayle A. Sulik, that is “thought-provoking and probing argument against the industry of awareness-raising”

From the description:

Pink ribbon paraphernalia saturate shopping malls, billboards, magazines, television, and other venues, all in the name of breast cancer awareness. (…) Gayle Sulik shows that though this “pink ribbon culture” has brought breast cancer advocacy much attention, it has not had the desired effect of improving women’s health. It may, in fact, have done the opposite. Based on eight years of research, analysis of advertisements and breast cancer awareness campaigns, and hundreds of interviews with those affected by the disease, Pink Ribbon Blues highlights the hidden costs of the pink ribbon as an industry, one in which breast cancer has become merely a brand name with a pink logo.

The following quote from a woman who had lost her mother to breast cancer illustrates the feeling of many (see comments):

As the years went by, life provided me with more reasons to hate pink. Frustration over society-defined gender roles piled on as did annoyance at the image of ultimate feminine woman. And then came the big one.

Breast cancer.

My mom passed away after a six-year long battle with breast cancer at the age of 45.

When pink later became symbolic of breast cancer awareness, I wanted to punch some pink piggies. I know that some people choose to wear pink to honor or remember or show support for a loved one. That is not what I get my panties in a bunch about–it’s the way corporate America has grabbed that pink flag and waved it to and fro for their own profit that makes me furious.

I remember once standing in the grocery store and staring at a bag of pink ribbon-adorned M&Ms, my blood boiling harder with every passing second.

She ends her post with:

Everyone has a story. Some have seen the scars of a mastectomy. Some have witnessed the toll that chemotherapy takes on a body. Some have lived the pain. We all know it’s bad.

I, for one, don’t need pink to remind me.

That same is true for me. I’ve seen my mother battling breast cancer -she is a survivor- and I have seen the scars of mastectomy and these are nowhere near pink ribbon.

“Breast Cancer is not a Pink Ribbon” tweeted Gilles Frydman yesterday and he meant a great pictures exhibition that lasted 3 days, showing portraits of young topless breast cancer survivors shot by fashion photographer David Jay.

At first I found it mainly confronting: this is the reality of breast cancer! As described elsewhere (Jezebel):

Seeing scarred and reconstructed mammary glands is not just shocking because of the way breasts are fetishized in our society, but because it speaks to how much we hide, gloss over and tidy up disease. Breasts are one of the defining physical attributes for identifying a woman. Breast cancer eats away at flesh meant to nourish. Surgery is a brutal procedure from which to recover and heal. But cute, clean, pink ribbons have come to symbolize all that.

But at a second and third look, I mainly saw the beauty of the photo’s, the fierceness of the women and their beautiful eyes.

Exactly as put into words at the website of the SCAR project:

Although Jay began shooting The SCAR Project primarily as an awareness raising campaign he was not prepared for something much more immediate . . . and beautiful: “For these young women, having their portrait taken seems to represent their personal victory over this terrifying disease.

SCAR by the way stands for ‘Surviving Cancer. Absolute Reality.”

David Jay was inspired to act when a dear friend was diagnosed with breast cancer at the age of 32.

The SCAR-project is “dedicated to the more than 10,000 women under the age of 40 who will be diagnosed this year alone The SCAR Project is an exercise in awareness, hope, reflection and healing. The mission is three-fold: Raise public consciousness of early-onset breast cancer, raise funds for breast cancer research/outreach programs and help young survivors see their scars, faces, figures and experiences through a new, honest and ultimately empowering lens.”

The exhibition was last week in New York, but you can still see the photographs at the website of the SCAR-project.

Furthermore, you can participate in the project and/or buy the (signed) SCAR project book ($55).

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Search OVID EMBASE and Get MEDLINE for Free…. without knowing it

19 10 2010

I have the impression that OVIDSP listens more to librarians than the NLM, who considers the end users of databases like PubMed more important, mainly because there are more of them. On the other hand NLM communicates PubMed’s changes better (NLM Technical Bulletin) and has easier to find tutorials & FAQs, namely at the PubMed homepage.

I gather that the new changes to the OVIDSP interface are the reason why two older OVID posts are the recent number 2 and 3 hits on my blog. My guess is that people are looking for some specific information on OVID’s interface changes that they can’t easily access otherwise.

But this post won’t address the technical changes. I will write about this later.

I just want to mention a few changes to the OVIDSP databases MEDLINE and EMBASE, some of them temporary, that could have been easily missed.

[1] First, somewhere in August, OVID MEDLINE contained only indexed PubMed articles. I know that OVID MEDLINE misses some papers PubMed already has -namely the “as supplied by publisher” subset-, but this time the difference was dramatic: “in data review” and “in process” papers weren’t found as well. I almost panicked, because if I missed that much in OVID MEDLINE, I would have to search PubMed as well, and adapt the search strategy…. and, since I already lost hours because of OVID’s extreme slowness at that time, I wasn’t looking forward to this.

According to an OVID-representative this change was not new, but was already there since (many) months. Had I been blind? I checked the printed search results of a search I performed in June. It was clear that the newer update found less records, meaning that some records were missed in the current (August) update. Furthermore the old Reference Manager database contained non-indexed records. So no problems then.

But to make a long story short. Don’t worry: this change disappeared as quickly as it came.
I would have doubted my own eyes, if my colleague hadn’t seen it too.

If you have done a MEDLINE OVID search in the second half of August you might like to check the results.

[2] Simultaneously there was another change. A change that is still there.

Did you know that OVID EMBASE contains MEDLINE records as well? I knew that you could search EMBASE.com for MEDLINE and EMBASE records using the “highly praised EMTREE“, but not that OVID EMBASE recently added these records too.

They are automatic found by the text-word searches and by the EMTREE already includes all of MeSH.

Should I be happy that I get these records for free?

No, I am not.

I always start with a MEDLINE search, which is optimized for MEDLINE (with regard to the MeSH).

Since indexing by  EMTREE is deep, I usually have (much) more noise (irrelevant hits) in EMBASE.

I do not want to have an extra number of MEDLINE-records in an uncontrolled way.

I can imagine though, that it would be worthwhile in case of a quick search in EMBASE alone: that could save time.
In my case, doing extensive searches for systematic reviews I want to be in control. I also want to show the number of articles from MEDLINE and the number of extra hits from EMBASE.

(Later I realized that a figure shown by the OVID representative wasn’t fair: they showed the hits obtained when searching EMBASE, MEDLINE and other databases in Venn diagrams: MEDLINE offered little extra beyond EMBASE, which is self-evident, considering that EMBASE includes almost all MEDLINE records.- But I only learned this later.)

It is no problem if you want to include these MEDLINE records, but it is easy to exclude them.

You can limit for MEDLINE or EMBASE records.

Suppose your last search set is 26.

Click Limits > Additional Limits > EMBASE (or MEDLINE)

Alternatively type: limit 26 to embase (resp limit 26 to medline) Added together they make 100%

If only they would have told us….


3. EMBASE OVID now also adds conference abstracts.

A good thing if you do an exhaustive search and want to include unpublished material as well (50% of the conference abstracts don’t get published).

You can still exclude them if you like  (see publication types to the right)

Here is what is written at EMBASE.com

Embase now contains almost 800 conferences and more than 260,000 conference abstracts, primarily from journals and journal supplements published in 2009 and 2010. Currently, conference abstracts are being added to Embase at the rate of 1,000 records per working day, each indexed with Emtree.
Conference information is not available from PubMed, and is significantly greater than BIOSIS conference coverage. (…)

4. And did you know that OVID has eliminated StopWords from MEDLINE and EMBASE? Since  a few years you can now search for words or phrases like is there hope.tw. Which is a very good thing, because it broadens the possibility to search for certain word strings. However, it isn’t generally known.

OVID changed it after complaints by many, including me and a few Cochrane colleagues. I thought I had written a post on it before, but I apparently I haven’t ;) .

Credits

Thanks to Joost Daams who always has the latest news on OVID.

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Problems with Disappearing Set Numbers in PubMed’s Clinical Queries

18 10 2010

In some upcoming posts I will address various problems related to the changing interfaces of bibliographic databases.

We, librarians and end users, are overwhelmed by a flood of so-called upgrades, which often fail to bring the improvements that were promised….. or which go hand-in-hand with temporary glitches.

Christina of Christina’s Lis Rant even made rundown of the new interfaces of last summer. Although she didn’t include OVID MEDLINE/EMBASE, the Cochrane Library and Reference manager in her list, the total number of changed interfaces reached 22 !

As a matter of fact, the Cochrane Library was suffering some outages yesterday, to repair some bugs. So I will postpone my coverage of the Cochrane bugs a little.

And OVID send out a notice last week: This week Ovid will be deploying a software release of the OvidSPplatform that will add new functionality and address improvements to some existing functionality.”

In this post I will confine myself to the PubMed Clinical Queries. According to Christina PubMed changes “were a bit ago”, but PubMed continuously tweaks  its interface, often without paying much attention to its effects.

Back in July, I already covered that the redesign of the PubMed Clinical Queries was no improvement for people who wanted to do more than a quick and dirty search.

It was no longer possible to enter a set number in the Clinical Queries search bar. Thus it wasn’t possible to set up a search in PubMed first and to then enter the final set number in the Clinical Queries. This bug was repaired promptly.

From then on, the set number could be entered again in the clinical queries.

However, one bug was replaced by another: next, search numbers were disappearing from the search history.

I will use the example I used before: I want to know if spironolactone reduces hirsutism in women with PCOS, and if it works better than cyproterone acetate.

Since little is published about this topic,  I only search for  hirsutism and spironolactone. These terms  map correctly with  MeSH terms. In the MeSH database I also see (under “see also”) that spironolactone belongs to the aldosterone antagonists, so I broaden spironolactone (#2) with “Aldosterone antagonists”[pharmacological Action] using “OR” (set #7). My last set (#8) consists of #1 (hirsutism) AND #7 (#2 OR #6)

Next I go to the Clinical Queries in the Advanced Search and enter #8. (now possible again).

I change the Therapy Filter from “broad”  to “narrow”, because the broad filter gives too much noise.

In the clinical queries you see only the first five results.

Apparently even the clinical queries are now designed to just take a quick look at the most recent results, but of course, that is NOT what we are trying to achieve when we search for (the best) evidence.

To see all results for the narrow therapy filter I have to go back to the Clinical Queries again and click on see all (27) [5]

A bit of a long way about. But it gets longer…


The 27 hits, that result from combining the Narrow therapy filter with my search #8 appears. This is set #9.
Note it is a lower number than set #11 (search + systematic review filter).

Meanwhile set #9 has disappeared from my history.

This is a nuisance if I want to use this set further or if I want to give an overview of my search, i.e. for a presentation.

There are several tricks by which this flaw can be overcome. But they are all cumbersome.

1. Just add set number (#11 in this case, which is the last search (#8) + 3 more) to the search history (you have to remember the search set number though).

This is the set number remembered by the system. As you see in the history, you “miss” certain sets. #3 to #5 are for instance are searches you performed in the MeSH-database, which show up in the History of the MeSH database, but not in PubMed’s history.

The Clinical query set number is still there, but it doesn’t show either. Apparently the 3 clinical query-subsets yield a separate set number, whether the search is truly performed or not. In this case  #11 for (#8) AND systematic[sb], #9 for (#8) AND (Therapy/Narrow[filter]). And #10 for (#8) AND the medical genetics filter.

In this way you have all results in your history. It isn’t immediately clear, however, what these sets represent.

2. Use the commands rather than going to the clinical queries.

Thus type in the search bar: #8 AND systematic[sb]

And then: #8 AND (Therapy/Narrow[filter])

It is easiest to keep all filters in Word/Notepad and copy/paste each time you need the filter

3. Add clinical queries as filters to your personal NCBI account so that the filters show up each time you do a search in PubMed. This post describes how to do it.

Anyway these remain just tricks to try to make something right that is wrong.

Furthermore it makes it more difficult to explain the usefulness of the clinical queries to doctors and medical students. Explaining option 3 takes too long in a short course, option 1 seems illogical and 2 is hard to remember.

Thus we want to keep the set numbers in the history, at least.

A while ago Dieuwke Brand notified the NLM of this problem.

Only recently she received an answer saying that:

we are aware of the continuing problem.  The problem remains on our programmers’ list of items to investigate.  Unfortunately, because this problem appears to be limited to very few users, it has been listed as a low priority.

Only after a second Dutch medical librarian confirmed the problem to the NLM, saying it not only affects one or two librarians, but all the students we teach (~1000-2000 students/university/yearly), they realized that it was a more widespread problem than Dieuwke Brand’s personal problem. Now the problem has a higher priority.

Where is the time that a problem was taken for what it was? As another librarian sighed: Apparently something is only a problem if many people complain about it.

Now I know this (I regarded Dieuwke as a delegate of all Dutch Clinical Librarians), I realize that I have to “complain” myself, each time I and/or my colleagues encounter a problem.

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Friday Foolery #36 : Friends on Facebook

15 10 2010

I found this hilarious South Park video about Facebook Friends on Jud’s Education Emporium.

It was used to illustrate that “friending” doesn’t mean a lot, although in this video it does mean an awful lot to some real-life friends of Stan.

In real life this happens too. See Paul’s “outpouring” on Facebook…..

(relatie=relation(ship))

Paul has a relation (on Facebook)

 





Medical Information Matters 2.8 is up!

15 10 2010

The new edition of Medical Information Matters (formerly Medlibs round) is up at Danielhooker.com.

The main theme is “Programs in libraries or medical education”.
Besides two posts from this blog (A Filter for Finding Animal Studies in PubMed” and more on the topic: An Educator by Chance) the following topics are included: a new MeSH (inclusion under mild librarian pressure), PubMed in your pocket, embedding Google Gadgets in normal webpages and experiences with introducing social bookmarking to medical students.
If you find this description to cryptic (and I bet you do), then I invite you to read the entire post here. I found it a very pleasant read.

Since we are already midway October, I would like to invite you to start submitting here (blog carnival submission form).

Our next host is Dean Giustini of the The Search Principle blog. The deadline is in about 3 weeks ( November 6th).

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An Educator by Chance

13 10 2010

The topic of the oncoming edition of the blog carnivalMedical Information Matters“, hosted by Daniel Hooker, is close to my heart.

Daniel at his call for submissions post:

I’d love to see posts on new things you’re trying out this year: new projects, teaching sessions, innovative services. Maybe it’s something tried and true that you’d like to reflect on. And this goes for anyone starting out fresh this term, not just librarians!

When I started as a clinical librarian 5 years ago, I mainly did search requests. Soon I also gave workshops as part of evidence based practice courses.

Our library gave the normal library courses PubMed, Reference Manager etc. We did little extra for medical students. There was a library introduction at the beginning and a PubMed training at the end of the curriculum.

Thus, when the interns had to do a CAT (Critically Appraised Topic), they had to start from SCRATCH ;) : learn the PICO, domains, study types, searching the various databases.  After I gave  a dozen or so 1-hour long introductions to consecutive interns, repeating the same things over and over, I realized this was an ineffective use of time. So I organized a monthly CAT-introduction with a computer workshop. After this introduction I helped interns with their specific CAT, if necessary.

This course is appreciated very much and  interns usually sigh: “why didn’t we learn this before?! If we had known this…”, etcetera.

Thus we, librarians, were very enthusiastic when we got more time in the newly organized curriculum.

We made e-learning modules for the first year, two for the second year, a Pubmed-tutorial, and a computer workshop (150 min!). In the 4th year we grade the CATs.

The e-learning modules costed me tons of time. If you read the post “How to become a big e-learning nerd by mistake” at Finite Attention Span you understand why.

We used a system that was designed for exams. On my request the educational department embed the system in a website, so students could go back and forth. Lacking any good books on the topic, students should also be able to reread the text and print whatever they liked.

I was told that variation was important. Thus I used each and every of the 10 available question types. Drop down menus, clickable menus, making right pairs of terms etc. Ooh and I loved the one I used for PICO’s, where you could drag words in a sentence to the P, I, C or O. Wonderful.

Another e-learning module consisted largely of Adobe Captivate movies. As  described in the above mentioned post:

Recognise that you are on a learning curve. First of all, it is vital that your software does not always remind you to save individual files before closing the program. It is especially helpful if you can demonstrate this three times inside a week, so that you end up losing the equivalent of about two days’ work: this will provide you with a learning experience that is pretty much optimised.

Swear. Vigorously.

Become a virtuoso of the panic-save, performing Ctrl+S reflexively in your sleep, every three minutes (…)

Correcting the callouts and highlight boxes and animation timings so they don’t look like they were put together by committee is complicated. Also, writing really clear, unambiguous copy takes time.

It sounds familiar. It also regularly happened to me that I started with the wrong resolution. Then I heard afterwards: “Sorry, we can only use 800×600.”

But workshops are also time-consuming. Largely because the entire librarian staff is needed to run 30 workshops within a month (we have 350 students per year). Of course it didn’t end with those workshops. I had to make the lesson plan materials, had to instruct the tutors, make the time tables, the attendance lists and then put the data into an excel sheet again. I love it!

The knowledge is tested by exams. This year I had to make the questions myself -and score them too (luckily with help of one or two colleagues). Another time buster. The CATs had to be scored as well.

But it is worth all the pain and effort, isn’t it?

Students are sooo glad they learned all about EBM, CATS, scientific literature and searching…

Well, duh, not really.

Some things I learned in the meantime

  1. Medical students don’t give a da do not care much about searching and information literacy.
  2. Medical students don’t choose that study for nothing. They want to become doctors, not librarians.
  3. At the time we give the courses, the students not really need it. Unlike the interns, they do not need to present a CAT, shortly.
  4. Most of our work is undone by the influence of peers or tutors that learn the students all kind of “tricks” that aren’t.
  5. It is hard to make good exams. If the reasoning isn’t watertight, students will find it. And protest against it.
  6. …. Because even more important than becoming a doctor is their desire to pass the exams
  7. If the e-learning isn’t compulsory, it won’t be done.
  8. You can’t  test information literacy by multiple choice questions. It is “soft” knowledge, more a kind of approach or reasoning. Similarly PICO’s are seldom 100% wrong or right. The value of PICO-workshops lies in the discussions.
  9. The students just started their study. They’re mostly teens. These kids will have a completely other attitude after 4 years (no longer yelling, joking, mailing, Facebook-ing, or at least they are likely to stop after you ask).
  10. Education is something I did by chance. I just do it “in addition to my normal work”, i.e. in the same time.
  11. Even more important, I’m a beginner and have had no specific training. So I have to learn it the hard way.

Let me give some examples.

This year I wanted to update one of my modules. I had to, because practically all interfaces have changed the last two years (Think about PubMed for instance).

I made an appointment with the education department, because they had helped me enormously before.

Firstly I noticed that my name had been replaced by those of 3 people who hadn’t done anything (at least with regard to this particular e-learning course). Perhaps not so relevant here. But the first red flag…

The module was moved to another system. It looked much nicer, but apparently only allowed a few of those 10 types of questions. The drag and drop questions, I was so fond of, were replaced by irritating drop down menus. With the questions I made, it didn’t make sense.

The movies couldn’t be plaid fast forward, back or be stopped.

And the girl who I spoke to, a medical student herself, couldn’t disguise her dislike of the movies. First she didn’t like the call-outs and highlight boxes, she rather liked a voice (me speaking, deleting the laborious call-outs ?!). Then she said the videos were endless and it was nicer when the students could try it themselves (which was in fact the assignment). She ignored my suggestion that Adobe is suitable for virtual online training.

Then someone next to her said: Do you know “Snag-it”, you can make movies with that too!?

Do I know Snag-it? Yes I do. I even bought it for my home computer. But Snag-it is nowhere near Adobe Captivate, at least regarding call-outs and assembly. I almost mentioned Camtasia, which is from the same company as Snag-it, but more suitable for this job.

Then the girl said the movies were only meant to show “where to press the buttons”, which I repeatedly denied: those movies were meant to highlight the value of the various sources. She also suggested that I should do some usability testing, not on my colleagues, but on the students.

Funny how insights can change over times. The one who helped me considered it one of the best tutorials.

While talking to her, it stroke me that the movies were taking very long and I wondered whether each single call-out saying “press this” was functional. Perhaps she was right in a way. Perhaps some movies should be changed into plain screenshots (which I had tried to avoid, because they were so annoying Powerpoint like). If my aim wasn’t that students learned which button to press, why show it all the time?? (perhaps because Adobe shows every mouse click, it is so easy to keep it in..)

It is a long way to develop something that is educative, effective and not boring….

But little by little we can make things better.

Last year one of the coordinators proposed not to take an exam the first year but give an assignment. The students had to search for an original study on a topic in PubMed (2nd semester) and write a summary about it (3rd semester). The PubMed tutorial became compulsory, but the two Q & A sessions (with computers) were voluntary. Half of the students came to those sessions. And the atmosphere was very good. Most students really wanted to find a good study (you could only claim an article once). Some fished whether the answers were worth the full 4 points and what they had to do to get it. The quality of the searches and the general approach were quite good.

In good spirits I will start with updating the other modules. The first should be finished in a few days. That is… if they didn’t move this module to the next semester, as the catalog indicates.

That would be a shame, because then I have to change all the cardiology examples into pulmonology examples.

Gosh!…. No!!

Credits

The title is inspired by the  post “How to become a big e-learning nerd by mistake”.
Thanks to Annemarie Cunningham (@amcunningham on Twitter) for alerting me to it.

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How will we ever keep up with 75 Trials and 11 Systematic Reviews a Day?

6 10 2010

ResearchBlogging.orgAn interesting paper was published in PLOS Medicine [1]. As an information specialist and working part time for the Cochrane Collaboration* (see below), this topic is close to my heart.

The paper, published in PLOS Medicine is written by Hilda Bastian and two of my favorite EBM devotees ànd critics, Paul Glasziou and Iain Chalmers.

Their article gives an good overview of the rise in number of trials, systematic reviews (SR’s) of interventions and of medical papers in general. The paper (under the head: Policy Forum) raises some important issues, but the message is not as sharp and clear as usual.

Take the title for instance.

Seventy-Five Trials and Eleven Systematic Reviews a Day:
How Will We Ever Keep Up?

What do you consider its most important message?

  1. That doctors suffer from an information overload that is only going to get worse, as I did and probably also in part @kevinclauson who tweeted about it to medical librarians
  2. that the solution to this information overload consists of Cochrane systematic reviews (because they aggregate the evidence from individual trials) as @doctorblogs twittered
  3. that it is just about “too many systematic reviews (SR’s) ?”, the title of the PLOS-press release (so the other way around),
  4. That it is about too much of everything and the not always good quality SR’s: @kevinclauson and @pfanderson discussed that they both use the same “ #Cochrane Disaster” (see Kevin’s Blog) in their  teaching.
  5. that Archie Cochrane’s* dream is unachievable and ought perhaps be replaced by something less Utopian (comment by Richard Smith, former editor of the BMJ: 1, 3, 4, 5 together plus a new aspect: SR’s should not only  include randomized controlled trials (RCT’s)

The paper reads easily, but matters of importance are often only touched upon.  Even after reading it twice, I wondered: a lot is being said, but what is really their main point and what are their answers/suggestions?

But lets look at their arguments and pieces of evidence. (Black is from their paper, blue my remarks)

The landscape

I often start my presentations “searching for evidence” by showing the Figure to the right, which is from an older PLOS-article. It illustrates the information overload. Sometimes I also show another slide, with (5-10 year older data), saying that there are 55 trials a day, 1400 new records added per day to MEDLINE and 5000 biomedical articles a day. I also add that specialists have to read 17-22 articles a day to keep up to date with the literature. GP’s even have to read more, because they are generalists. So those 75 trials and the subsequent information overload is not really a shock to me.

Indeed the authors start with saying that “Keeping up with information in health care has never been easy.” The authors give an interesting overview of the driving forces for the increase in trials and the initiation of SR’s and critical appraisals to synthesize the evidence from all individual trials to overcome the information overload (SR’s and other forms of aggregate evidence decrease the number needed to read).

In box 1 they give an overview of the earliest systematic reviews. These SR’s often had a great impact on medical practice (see for instance an earlier discussion on the role of the Crash trial and of the first Cochrane review).
They also touch upon the institution of the Cochrane Collaboration.  The Cochrane collaboration is named after Archie Cochrane who “reproached the medical profession for not having managed to organise a “critical summary, by speciality or subspecialty, adapted periodically, of all relevant randomised controlled trials” He inspired the establishment of the international Oxford Database of Perinatal Trials and he encouraged the use of systematic reviews of randomized controlled trials (RCT’s).

A timeline with some of the key events are shown in Figure 1.

Where are we now?

The second paragraph shows many, interesting, graphs (figs 2-4).

Annoyingly, PLOS only allows one sentence-legends. The details are in the (WORD) supplement without proper referral to the actual figure numbers. Grrrr..!  This is completely unnecessary in reviews/editorials/policy forums. And -as said- annoying, because you have to read a Word file to understand where the data actually come from.

Bastian et al. have used MEDLINE’s publication types (i.e. case reports [pt], reviews[pt], Controlled Clinical Trial[pt] ) and search filters (the Montori SR filter and the Haynes narrow therapy filter, which is built-in in PubMed’s Clinical Queries) to estimate the yearly rise in number of study types. The total number of Clinical trials in CENTRAL (the largest database of controlled clinical trials, abbreviated as CCTRS in the article) and the Cochrane Database of Systematic Reviews (CDSR) are easy to retrieve, because the numbers are published quaterly (now monthly) by the Cochrane Library. Per definition, CDSR only contains SR’s and CENTRAL (as I prefer to call it) contains almost invariably controlled clinical trials.

In short, these are the conclusions from their three figures:

  • Fig 2: The number of published trials has raised sharply from 1950 till 2010
  • Fig 3: The number of systematic reviews and meta-analysis has raised tremendously as well
  • Fig 4: But systematic reviews and clinical trials are still far outnumbered by narrative reviews and case reports.

O.k. that’s clear & they raise a good point : an “astonishing growth has occurred in the number of reports of clinical trials since the middle of the 20th century, and in reports of systematic reviews since the 1980s—and a plateau in growth has not yet been reached.
Plus indirectly: the increase in systematic reviews  didn’t lead to a lower the number of trials and narrative reviews. Thus the information overload is still increasing.
But instead of discussing these findings they go into an endless discussion on the actual data and the fact that we “still do not know exactly how many trials have been done”, to end the discussion by saying that “Even though these figures must be seen as more illustrative than precise…” And than you think. So what? Furthermore, I don’t really get their point of this part of their article.

 

Fig. 2: The number of published trials, 1950 to 2007.

 

 

With regard to Figure 2 they say for instance:

The differences between the numbers of trial records in MEDLINE and CCTR (CENTRAL) (see Figure 2) have multiple causes. Both CCTR and MEDLINE often contain more than one record from a single study, and there are lags in adding new records to both databases. The NLM filters are probably not as efficient at excluding non-trials as are the methods used to compile CCTR. Furthermore, MEDLINE has more language restrictions than CCTR. In brief, there is still no single repository reliably showing the true number of randomised trials. Similar difficulties apply to trying to estimate the number of systematic reviews and health technology assessments (HTAs).

Sorry, although some of these points may be true, Bastian et al. don’t go into the main reason for the difference between both graphs, that is the higher number of trial records in CCTR (CENTRAL) than in MEDLINE: the difference can be simply explained by the fact that CENTRAL contains records from MEDLINE as well as from many other electronic databases and from hand-searched materials (see this post).
With respect to other details:. I don’t know which NLM filter they refer to, but if they mean the narrow therapy filter: this filter is specifically meant to find randomized controlled trials, and is far more specific and less sensitive than the Cochrane methodological filters for retrieving controlled clinical trials. In addition, MEDLINE does not have more language restrictions per se: it just contains a (extensive) selection of  journals. (Plus people more easily use language limits in MEDLINE, but that is besides the point).

Elsewhere the authors say:

In Figures 2 and 3 we use a variety of data sources to estimate the numbers of trials and systematic reviews published from 1950 to the end of 2007 (see Text S1). The number of trials continues to rise: although the data from CCTR suggest some fluctuation in trial numbers in recent years, this may be misleading because the Cochrane Collaboration virtually halted additions to CCTR as it undertook a review and internal restructuring that lasted a couple of years.

As I recall it , the situation is like this: till 2005 the Cochrane Collaboration did the so called “retag project” , in which they searched for controlled clinical trials in MEDLINE and EMBASE (with a very broad methodological filter). All controlled trials articles were loaded in CENTRAL, and the NLM retagged the controlled clinical trials that weren’t tagged with the appropriate publication type in MEDLINE. The Cochrane stopped the laborious retag project in 2005, but still continues the (now) monthly electronic search updates performed by the various Cochrane groups (for their topics only). They still continue handsearching. So they didn’t (virtually?!) halted additions to CENTRAL, although it seems likely that stopping the retagging project caused the plateau. Again the author’s main points are dwarfed by not very accurate details.

Some interesting points in this paragraph:

  • We still do not know exactly how many trials have been done.
  • For a variety of reasons, a large proportion of trials have remained unpublished (negative publication bias!) (note: Cochrane Reviews try to lower this kind of bias by applying no language limits and including unpublished data, i.e. conference proceedings, too)
  • Many trials have been published in journals without being electronically indexed as trials, which makes them difficult to find. (note: this has been tremendously improved since the Consort-statement, which is an evidence-based, minimum set of recommendations for reporting RCTs, and by the Cochrane retag-project, discussed above)
  • Astonishing growth has occurred in the number of reports of clinical trials since the middle of the 20th century, and in reports of systematic reviews since the 1980s—and a plateau in growth has not yet been reached.
  • Trials are now registered in prospective trial registers at inception, theoretically enabling an overview of all published and unpublished trials (note: this will also facilitate to find out reasons for not publishing data, or alteration of primary outcomes)
  • Once the International Committee of Medical Journal Editors announced that their journals would no longer publish trials that had not been prospectively registered, far more ongoing trials were being registered per week (200 instead of 30). In 2007, the US Congress made detailed prospective trial registration legally mandatory.

The authors do not discuss that better reporting of trials and the retag project might have facilitated the indexing and retrieval of trials.

How Close Are We to Archie Cochrane’s Goal?

According to the authors there are various reasons why Archie Cochrane’s goal will not be achieved without some serious changes in course:

  • The increase in systematic reviews didn’t displace other less reliable forms of information (Figs 3 and 4)
  • Only a minority of trials have been assessed in systematic review
  • The workload involved in producing reviews is increasing
  • The bulk of systematic reviews are now many years out of date.

Where to Now?

In this paragraph the authors discuss what should be changed:

  • Prioritize trials
  • Wider adoption of the concept that trials will not be supported unless a SR has shown the trial to be necessary.
  • Prioritizing SR’s: reviews should address questions that are relevant to patients, clinicians and policymakers.
  • Chose between elaborate reviews that answer a part of the relevant questions or “leaner” reviews of most of what we want to know. Apparently the authors have already chosen for the latter: they prefer:
    • shorter and less elaborate reviews
    • faster production ànd update of SR’s
    • no unnecessary inclusion of other study types other than randomized trials. (unless it is about less common adverse effects)
  • More international collaboration and thereby a better use  of resources for SR’s and HTAs. As an example of a good initiative they mention “KEEP Up,” which will aim to harmonise updating standards and aggregate updating results, initiated and coordinated by the German Institute for Quality and Efficiency in Health Care (IQWiG) and involving key systematic reviewing and guidelines organisations such as the Cochrane Collaboration, Duodecim, the Scottish Intercollegiate Guidelines Network (SIGN), and the National Institute for Health and Clinical Excellence (NICE).

Summary and comments

The main aim of this paper is to discuss  to which extent the medical profession has managed to make “critical summaries, by speciality or subspeciality, adapted periodically, of all relevant randomized controlled trials”, as proposed 30 years ago by Archie Cochrane.

Emphasis of the paper is mostly on the number of trials and systematic reviews, not on qualitative aspects. Furthermore there is too much emphasis on the methods determining the number of trials and reviews.

The main conclusion of the authors is that an astonishing growth has occurred in the number of reports of clinical trials as well as in the number of SR’s, but that these systematic pieces of evidence shrink into insignificance compared to the a-systematic narrative reviews or case reports published. That is an important, but not an unexpected conclusion.

Bastian et al don’t address whether systematic reviews have made the growing number of trials easier to access or digest. Neither do they go into developments that have facilitated the retrieval of clinical trials and aggregate evidence from databases like PubMed: the Cochrane retag-project, the Consort-statement, the existence of publication types and search filters (they use themselves to filter out trials and systematic reviews). They also skip other sources than systematic reviews, that make it easier to find the evidence: Databases with Evidence Based Guidelines, the TRIP database, Clinical Evidence.
As Clay Shirky said: “It’s Not Information Overload. It’s Filter Failure.”

It is also good to note that case reports and narrative reviews serve other aims. For medical practitioners rare case reports can be very useful for their clinical practice and good narrative reviews can be valuable for getting an overview in the field or for keeping up-to-date. You just have to know when to look for what.

Bastian et al have several suggestions for improvement, but these suggestions are not always underpinned. For instance, they propose access to all systematic reviews and trials. Perfect. But how can this be attained? We could stimulate authors to publish their trials in open access papers. For Cochrane reviews this would be desirable but difficult, as we cannot demand from authors who work for months for free to write a SR to pay the publications themselves. The Cochrane Collab is an international organization that does not receive subsidies for this. So how could this be achieved?

In my opinion, we can expect the most important benefits from prioritizing of trials ànd SR’s, faster production ànd update of SR’s, more international collaboration and less duplication. It is a pity the authors do not mention other projects than “Keep up”.  As discussed in previous posts, the Cochrane Collaboration also recognizes the many issues raised in this paper, and aims to speed up the updates and to produce evidence on priority topics (see here and here). Evidence aid is an example of a successful effort.  But this is only the Cochrane Collaboration. There are many more non-Cochrane systematic reviews produced.

And then we arrive at the next issue: Not all systematic reviews are created equal. There are a lot of so called “systematic reviews”, that aren’t the conscientious, explicit and judicious created synthesis of evidence as they ought to be.

Therefore, I do not think that the proposal that each single trial should be preceded by a systematic review, is a very good idea.
In the Netherlands writing a SR is already required for NWO grants. In practice, people just approach me, as a searcher, the days before Christmas, with the idea to submit the grant proposal (including the SR) early in January. This evidently is a fast procedure, but doesn’t result in a high standard SR, upon which others can rely.

Another point is that this simple and fast production of SR’s will only lead to a larger increase in number of SR’s, an effect that the authors wanted to prevent.

Of course it is necessary to get a (reliable) picture of what has already be done and to prevent unnecessary duplication of trials and systematic reviews. It would the best solution if we would have a triplet (nano-publications)-like repository of trials and systematic reviews done.

Ideally, researchers and doctors should first check such a database for existing systematic reviews. Only if no recent SR is present they could continue writing a SR themselves. Perhaps it sometimes suffices to search for trials and write a short synthesis.

There is another point I do not agree with. I do not think that SR’s of interventions should only include RCT’s . We should include those study types that are relevant. If RCT’s furnish a clear proof, than RCT’s are all we need. But sometimes – or in some topics/specialties- RCT’s are not available. Inclusion of other study designs and rating them with GRADE (proposed by Guyatt) gives a better overall picture. (also see the post: #notsofunny: ridiculing RCT’s and EBM.

The authors strive for simplicity. However, the real world isn’t that simple. In this paper they have limited themselves to evidence of the effects of health care interventions. Finding and assessing prognostic, etiological and diagnostic studies is methodologically even more difficult. Still many clinicians have these kinds of questions. Therefore systematic reviews of other study designs (diagnostic accuracy or observational studies) are also of great importance.

In conclusion, whereas I do not agree with all points raised, this paper touches upon a lot of important issues and achieves what can be expected from a discussion paper:  a thorough shake-up and a lot of discussion.

References

  1. Bastian, H., Glasziou, P., & Chalmers, I. (2010). Seventy-Five Trials and Eleven Systematic Reviews a Day: How Will We Ever Keep Up? PLoS Medicine, 7 (9) DOI: 10.1371/journal.pmed.1000326

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Friday Foolery [35] A Benzene Smiley

1 10 2010

A chemical professor by the Twittername of @Takaguchi (Tak), who describes himself as a “Chemist loving nanocarbons, supramolecules, main group elements, photoreactions, and photoproperties has this Twitter Avatar:

A benzene smiley…

Brilliant!

First seen at the Facebook Fan Page ( login required?) of Sciencebase.com (of David Bradley)

He referred to a post at The Reactive Chemistry Blog of …. uhhh again David Bradley, who is also the author of ScienceText

BTW I seem to smile /give thumbs up at David’s ScienceBase Facebook page a lot: I’m one of his top 13 Facebook fans (or likers) ever.
It is no surprise with so many funny ànd good science and tech articles.

Yeah.








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